Peptide String Mis-match
in siLigator
Peptide String Match
Spectrum Mill
Peptide Selector
Peptide List to Masses
MS Digest
MS Product
Help
Using case-insensitive (CI) string comparison
Excel Export
Maximum # of mismatched AA's:
0
1
2
3
Find cis-ligated peptides (prefix and suffix in same protein)
Min Prefix & Suffix Length:
3
4
5
Database:
Filters
Require Preceding Tryptic Site
Subset of Accession #'s to search:
Output Features
All gene symbols
Species
All accession numbers
All Start AA
Link to ClustalW Multi-Aligner
Link to Database Website
Show flanking sequence around variable modification sites
residues +/-
All Matched Peptides
Show previous, next AA's in matched protein
residues +/-
Enter peptide sequences: (regular expressions allowed)
VIGVGEFGEVCSGR TYIDPHtyEDPNQAVHEFAK TYVDPFTYEDPNQAVR MAGIFYFALFSCLFGICDAVTGSR TQMQQMHGRMVPV NILVNSNLVCK TYIDPHTYEDPNQAVHEFAK TYVDPFTYEDPNQAVR LIEDNEyTAR SVLEDFFTATEGQyQPQP NLLSVAYK EMQPTHPIR EDLVYQAK VLPFRPVLL VYLHHFDLR PVSYLPFTL YRAPLLYNL NYLESFYKF PTPSYLLLF RFSPPLRLF HLTDVWEKW YRLFVVDLR YSVAGLRPF KFLDPLYQVSM HYAVLLHLL EPPAALRPL