Spectrum Mill - Tool Belt Utilities
Select a Tool:
Stop Process
Terminate processes launched via the Spectrum Mill web server.
Click "List Processes" to list running processes related to Spectrum Mill.
Select one or more processes to stop, using the Ctrl key for multiple selection.
Create Saved Results File
Create a saved results file from validated rank 1 hits (small subset to quickly search previous hits with MS/MS Search)
Database:
Data Directory
(none selected)
Create MS/MS Search Summary File
Create MS/MS search summary file of rank 1 hits
(to use with Protein/Peptide Summary if MS/MS Search terminated abnormally)
Data Directory
(none selected)
View Parameter Table
View summary table of previously used parameters
Program:
Data Directory
(none selected)
File Collector
Copy files (* wildcard filenames allowed) from multiple directories to a single collection directory, rename the files to fromDirectory.filename to preserve the origin of each file.
Data Directories
From directories:
(None Selected)
To directory: (none selected)
Files:
List Modifications Details
Select smconfig file:
Create Reporter Ion correction factors
(iTRAQ 8-plex corrections do not vary by batch lot)
Batch:
Mass % of -2 % of -1 % of +1 % of +2
114
115
116
117
Apply Reporter Ion correction factors
Batch:
Data Directory
(none selected)
Convert Spectra
Inter-convert MS/MS spectral files ./cpick_in/runName.*.pkl <- -> ./runName.mzXML
Validation filter:
Data Directories
Data directories to convert:
(None Selected)
Export directory: (none selected)
Export Spectrum Mill MS/MS Search Results to PepXML
Convert MS/MS search summary file to multiple PepXML files (runName.pepXML)
Validation filter:
Required AAs:
Disallowed AAs:
 

Data Directories
Data directories to export:
(None Selected)
Search result files:
Export directory: (none selected)
Results